View example | Download nmrML file | Download original Raw Data The spectrum was recorded at 500.162 MHz on a Bruker Avance III spectrometer using a 5 mm probe flushed with nitrogen gas and an electronic reference for quantification (ERETIC2). The FT transformed spectrum is stored in the spectrumList/spectrum1D/spectrumDataArrayelement and its processingParameterSets. We here store a 1R NMR spectrum (as another binary blob) and including its metadata. This example illustrates how nmrML can include processed data beyond the raw FID data. Besides the FID it contains the Bruker 1R spectrum (real part data points) after FT processing. This spectrum is from a metabolomic profiling experiment on Lycopersicon esculentum. Example 2: Metabolic profiling of the Tomato plant, PhenoTom 2013 (Bruker), including a processed spectrum.View example | Download nmrML file | Download original FID Spectrometer operating at a proton NMR frequency of 599.83 MHz using a 5 mm inverse detection cryoprobe.ġH NMR spectra were recorded with the following parameters: digital resolution 0.367 Hz/point (32 K complexĭata points) pulse width (pw) = 3 ls (4☌) relaxation delay = 23.7 s acquisition time = 2.7 s number of transients = 160. The spectrum was recorded on a Varian VNMRS 600 NMR It just contains the raw data (FID) and no processed data/spectrum. Lupulus L.It shows how a minimal nmrML file as generated by the Vendor to nmrML converter looks like. This spectrum is from a metabolomic profiling experiment Humulus Example 1: A hop metabolite profiling experiment (Varian/Agilent), raw FID data.With these diverse use cases we hope to illustrate the versatileness of the nmrML data standard. NmrML Example Instances We here introduce six example nmrML data sets that were selected to show the expressivity of the nmrML format along different application settings such as Example 1: minimal raw data capture, Example 2: processed 1R spectrum inclusion, Example 3: single reference compound capture with complete compound peak annotations using NMR Assign,Įxample 4: representing a complex biosample spectrum with quantification information added to many identified molecules with Bayesil,Įxample 5: capturing a dataset that was drawn from the Metabolights repository, and Example 6: an example to illustrate 2D NMR spectrum capture for a HSQC experiment.
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